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How do I get cromwell to create soft-links?

Bioinformatics Asked by Greg Dougherty on August 22, 2021

The file system I’m running on doesn’t allow the creation of hard-links. Cromwell is trying to create hard-links to directories, and when that fails, it’s copying them. Which is leading to disk quota errors.

Is there a way that I can simply tell cromwell "try soft links first"? Without creating a whole config file?

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