How to implement SEG (Wootton and Federhen ,1993) algorithm?

Bioinformatics Asked on September 3, 2021

I want to implement SEG in my MATLAB environment and I’m relying on Wootton and Federhen (1993)
Reading the article I cannot succeed to understand what kind of process I have to implement in order to build my script. Specifically what kind of statistics I should follow to compute the complexity state and the repetition vector and what kind of procedure I have to do to calculate these statistics over the amino acid sequence.

Do you know some articles that explains in a better fashion what is needed, namely the mathematical process behind the results shown in the article? Code examples in other languages welcome.
Thank you in advance

matlab protein structure python r sequence analysis

How to implement SEG (Wootton and Federhen ,1993) algorithm?

Add your own answers!

Related Questions

COVID-19 GWAS: what is a cross-replicating association?

Are there any databases for gene co-expression or expression pattern clustering?

Is SNPRelate the goto package for PCA of SNP data in R?

data visualization RNAseq : scaling data for PCA and cluster dendogram

I do not understand the output of ssGSEA using GSVA package in R

Failed run beast v2.6.3 using test1.xml in STAECY v1.2.5 pacakage

Which database is good to store (metagenomic) relative abundance data?

NO_COOR reads not in a single block at the end 0 -1

MUMmer plot error. Line 884. What to do?

BAM to gene expression matrix (UMI counts per gene per cell),10X

Systematic literature review question doubt

How do I create Protein Ligand images

Is there public RESTful api for Gnomad?

How to identify genes from a genome assembly of C. Elegans?

TopHat2 versus HISAT2 inner workings

Question of Padj value (very high, infinite) got from dds

nextflow: Filter outputs of a process

Gene expression Table to Expression Matrix converstion

Filtering VEP annotation file

Find common SNPs in multiple VCF files

Ask a Question