How to implement SEG (Wootton and Federhen ,1993) algorithm?

Bioinformatics Asked on September 3, 2021

I want to implement SEG in my MATLAB environment and I’m relying on Wootton and Federhen (1993)
Reading the article I cannot succeed to understand what kind of process I have to implement in order to build my script. Specifically what kind of statistics I should follow to compute the complexity state and the repetition vector and what kind of procedure I have to do to calculate these statistics over the amino acid sequence.

Do you know some articles that explains in a better fashion what is needed, namely the mathematical process behind the results shown in the article? Code examples in other languages welcome.
Thank you in advance

Add your own answers!

Related Questions

NO_COOR reads not in a single block at the end 0 -1

1  Asked on May 19, 2021 by user9393


MUMmer plot error. Line 884. What to do?

0  Asked on May 18, 2021 by dansterboy


Is there public RESTful api for Gnomad?

5  Asked on May 14, 2021 by pasted


nextflow: Filter outputs of a process

1  Asked on May 10, 2021 by zillur-rahman


Filtering VEP annotation file

1  Asked on May 10, 2021 by jeni


Ask a Question

Get help from others!

© 2023 All rights reserved. Sites we Love: PCI Database, MenuIva, UKBizDB, Menu Kuliner, Sharing RPP, SolveDir