Is there an R package that computes homoplasy excess ratios (HER)?

Question

I want to calculate the homoplasy excess ratio for a phylogenetic tree, for example homoplasy resulting from recombination.
I am wondering if there are any R packages out there that will do this?

M__ · Answer

Maynard's Smith's homoplasy is what you want and it is available in the recombination detection package (RDP) described here. Its really a Windows package rather than R.

Is there an R package that computes homoplasy excess ratios (HER)?

One Answer

Add your own answers!

Ask a Question