Bioinformatics Asked on April 2, 2021
I have created a heat map using WGCNA using R. But the heat map command is not showing the plot and there is no error. I have a large number of modules and traits. I am not sure if that is the reason. But I tried making it in HPC R and it still is not showing any result plot. Thank you!
The plot is probably being drawn to a device that you cannot view on a cluster. If you're using the
plotNetworkHeatmap function, say, try something like this:
png("plot.png", ...) #specify height, width, etc plotNetworkHeatmap(....) #call your function dev.off()
plot.png file over to your local machine to view the plot.
Answered by Ram RS on April 2, 2021
If you've copied over from some of the WGNCA tutorials you might have additionally copied the sizeGrWindow command - it's caused some of my plots to disappear.
sizeGrWindow(9,6) # delete this line plot(...)
Answered by Jack Gisby on April 2, 2021
0 Asked on March 10, 2021 by liam-mcintyre
2 Asked on March 7, 2021 by beeta
0 Asked on March 7, 2021 by mh-lee
1 Asked on March 7, 2021
1 Asked on March 5, 2021 by bcarg
1 Asked on March 5, 2021 by user260878
2 Asked on March 4, 2021
0 Asked on March 3, 2021
0 Asked on March 1, 2021 by chu
0 Asked on March 1, 2021 by dowithr
1 Asked on March 1, 2021 by dumbledorethegrey
0 Asked on February 27, 2021 by alimm94
1 Asked on February 25, 2021 by shawnc
1 Asked on February 25, 2021
0 Asked on February 21, 2021 by user12256545
0 Asked on February 20, 2021 by law
Get help from others!