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I have a small scRNA-Seq dataset (n = 357, inhibitory neurons). This set of cells is split almost evenly between two conditions (Case and Control). I would like to test...
Asked on 12/16/2021
0 answerI have fitted a cox model on a pooled dataset of multiple studies, say studies A, B, and C. As these studies have different baseline hazard functions, I stratified for...
Asked on 12/13/2021
1 answerI have RNAseq data from 4 samples with 3 biological replicates per sample. I am currently trying to do the differential expression analysis with DESeq2 but the biological replicates will...
Asked on 12/13/2021
3 answerI wish to convert a kraken2 or metaphlan2 report into the R package to analyze using Phyloseq. I have performed obtained an importation and Phyloseq analysis, but the result was...
Asked on 12/11/2021
0 answerEDIT: I posted this as a bug, perhaps wait for the result of that? github All, I am using Snakemake to build a pipeline. To define input...
Asked on 12/11/2021
2 answerSometimes it useful to perform a nucleotide protein coding gene sequence alignment based on codons, not on individual nucleotides. For example for further codon model analysis it is important to...
Asked on 12/09/2021
3 answerThe SARS-Cov2 coronavirus's genome was released, and is now available on Genbank. Looking at it... 1 attaaaggtt tataccttcc caggtaacaa accaaccaac tttcgatctc ttgtagatct 61...
Asked on 12/09/2021
4 answerQuote:We found 4 insertions in the spike glycoprotein (S) which are unique to the 2019-nCoV and are not present in other coronaviruses. Importantly, amino acid residues in all the 4...
Asked on 12/09/2021
3 answerMaximum Likelihood analysis compares the tips or the species based on their sequence similarity while Parsimony analysis compares the characteristic features among the species. So far I did comparison of...
Asked on 12/09/2021
2 answerI have a set of 4 amino acids which i have aligned,but i want to compare then with respective nucleotide sequence in terms of change codon level. I have...
Asked on 12/07/2021 by kcm
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