Find answers to your questions about Bioinformatics or help others by answering their Bioinformatics questions.
I have a list of cell lines that should be compared against another list of cell lines as pairs. I am trying to find a way in order for me...
Asked on 11/17/2021
1 answerFirst of all I apologize without the question is very basic, I am taking my first steps in bioinformatics.Data informationWe are evaluating the correlation (using the Pearson, Kendall or Spearman...
Asked on 11/15/2021
1 answerMy data contain several chip-seq results. I have the peaks called by MACS2.I wanted to only look at those peaks that their size is e.g 500bp to 1000bp. How can...
Asked on 11/15/2021
2 answerMaxQuant is a software package for mass spectroscopy and proteomics. There is a windows version and a linux version. To run on linux you have to use a program that...
Asked on 11/12/2021
2 answerI'm looking at a genome sequence for 2019-nCoV on NCBI. The FASTA sequence looks like this:>MN988713.1 Wuhan seafood market pneumonia virus isolate 2019-nCoV/USA-IL1/2020, complete genomeATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTG... ...TTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAACoronavirus...
Asked on 11/12/2021
4 answerI want to extract metadata from experiment SRX1596422. I have sratoolkit and Entrex direct but not sure what line of code to use. Here's the link for the experiment: ...
Asked on 11/12/2021
1 answerI am analyzing viral metagenomics data (Illumina Miseq) for the first time. I have used Ray for de novo viral genome assembly before but I haven't done...
Asked on 11/10/2021
1 answerThe dilemma:I have around one million short sequences (21 bp to several 100s of basepairs) for which I need to identify all occurrences of in 20-30x coverage noisy long reads...
Asked on 11/10/2021
1 answerSay a database were to store human omics datasets. The human subjects are known and the sample size is rather small in size initially (n=500). The database contains genomics, transcriptomics,...
Asked on 11/04/2021
2 answerI guess the title is self-explanatory. I'd like to find the reference transcriptome files for a few human viruses. My RNA-seq samples are from human tumor cells that were infected...
Asked on 10/06/2021
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