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Are phylogenetic tree construction algorithms any different from clustering algorhithms? I suspect the answer is no. Of course phylogenetic tree construction uses biological knowledge, e.g special distance metrics, but does...
Asked on 09/04/2021
2 answerI tied to install genometools with anaconda:conda install -c bioconda genometoolsThough, after running that successfully the command gt is not available in my conda environment.The program 'gt' is currently...
Asked on 09/03/2021
2 answerI want to implement SEG in my MATLAB environment and I'm relying on Wootton and Federhen (1993)Reading the article I cannot succeed to understand what kind...
Asked on 09/03/2021
0 answerI have an alignment of multiple sequences in a FASTA file (output from MAFFT), for which I would like to simulate a phenotype using plink, but for that I need...
Asked on 09/03/2021 by Empiromancer
1 answerI am running an analysis of two phenotypes: mutant and control. I have a statistic used to rank the different genes, and the ranking is exactly the opposite between mutant...
Asked on 09/02/2021
2 answerI don't have any background in genetics and bioinformatics, so I ask you if you think that the arguments provided in the article The proximal origin of...
Asked on 09/02/2021
1 answerIm trying to change the active.ident to another column in metadata but this error keeps popping up! I recently upgraded to R version 4.0.2 from 3.6.1 The older version was...
Asked on 08/31/2021
1 answerI am trying to download DESeq2 in R 3.6.3. Is it possible?This is printed when I am trying: Warning in install.packages : package ‘DESeq2’ is not available (for R...
Asked on 08/31/2021
2 answerI have a dataset of genes I am trying to collect data on from public databases, to use as features in machine learning. I am trying to take some features...
Asked on 08/31/2021
1 answerThis is the BLAST tree of the latest coronavirus out of China (from Wuhan Institute of Virology, China). It seems strange that there is so much divergence from all the...
Asked on 08/30/2021 by Loopy
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