Plink 1.9 equivalent of --score sum in Plink 2.0

Question

I have previously performing Allelic scoring in Plink 1.9 using:

plink  
--score sum sumstats.txt

However, it seems this has changed in Plink 2.0. What is the equivalent function for Allelic scoring?

Christopher Chang · Answer

plink2 --score cols=+scoresums

See https://www.cog-genomics.org/plink/2.0/general_usage#colset and https://www.cog-genomics.org/plink/2.0/score for details.

One Answer