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Simulating 3' end tag-based scRNA-seq reads

Bioinformatics Asked by merv on July 26, 2020

Are there any tools that will simulate 3′ end tag-based single-cell RNA-seq reads? For example, Drop-seq, 10X Chromium, CEL-seq?

There are tools that simulate scRNA-seq gene count data (e.g. Splatter), but I can’t find anything that will simulate reads or even counts at the transcript level.

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