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Questions Tagged with "samtools"

Explore solved questions tagged with "samtools" or help others by answering their unsolved questions related to "samtools".

Obtaining HGDP project data in fasta format

1 answer

Bioinformatics Asked 2 years ago

Why does samtools mpileup sometimes include ref bases (other than ',' or '.')?

1 answer

Bioinformatics Asked 2 years ago

Unable to open .bam file in C++ using SeqAn due to 'seqan::UnknownExtensionError'

3 answer

Bioinformatics Asked 2 years ago

NO_COOR reads not in a single block at the end 0 -1

1 answer

Bioinformatics Asked 2 years ago by user9393

summarising read group information from a .bam file

0 answer

Bioinformatics Asked 2 years ago by user438383

How to convert a Pileup file to VCF format with Hg19 alignment

1 answer

Bioinformatics Asked 3 years ago by Samir Bouftass

Trying to create a .bam file without the need for a .sam file

2 answer

Bioinformatics Asked 3 years ago

Basic question about finding mRNA sequence in transcriptome

2 answer

Bioinformatics Asked 3 years ago

How do I find all supplementary mappings of a chimeric long (ONT) read mapped with NGMLR?

0 answer

Bioinformatics Asked 3 years ago by Liam McIntyre

samtools / bamUtil | Meaning of as Reference Name

1 answer

Bioinformatics Asked 3 years ago by Paul Endymion

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